Dr Utpal Bakshi

vidwan id: 501485

Male

Assistant Professor, Institute of Health Sciences
Presidency University

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Expertise

Mathematical and Computational Biology

Publications

Total Articles 10

Books 0

Proceedings 0

Publications

Scopus

Citations 356

h-index 6

CrossRef

Citations 379

h-index 6

Google Scholar

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Community & Membership

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Bio

The entire microbial repertoire of the human body, also called the microbiome, plays significant role in human health and disease and resides majorly in the human gut. I am interested in studying the perturbations of the microbiome (mainly in gut, but also in other body niches), both in human health and diseases, specifically using high-throughput omics data.

Personal Details

Male
Assistant Professor , Presidency University
Institute of Health Sciences, Presidency University, Kolkata

PostDoc

Other Institute 2021

Ph.D

CSIR-Indian Institute of Chemical Biology 2018

Assistant Professor Aug 2022 – Present

Presidency University | Institute of Health Sciences

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Dr Jyothi Alias Jyotsna Baragi

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Ms Shalini Saini

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Prof Annette M Bhambal

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SHIVANI SHARMA

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Organisations (191+)

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Mr Balaji Roy

Assistant Professor

Prof Avishek Adhikari

Head of the Department

Assistant Professor

Assistant Professor

Assistant Professor

Assistant Professor

Associate Professor

Dr Barada Laxmi Panda

Assistant Professor

Dr Barnali Chakrabarti

Associate Professor

Dr Barun Raychaudhuri

Professor

Co-Authors (8)

Dr Peketi Aditya

National Institute of Oceanography

Dr Abhrajyoti Ghosh

Bose Institute

Dr Aninda Mazumdar

National Institute of Oceanography

Dr Sandip Paul

CSIR-Indian Institute of Chemical Biology

Prof Subhra Kanti Mukhopadhyay

The University of Burdwan

Dr Subhrangshu Mandal

Visva-Bharati University

Dr Sandip Paul

JIS UNIVERSITY

Dr Wriddhiman Ghosh

Bose Institute

Scholarly Work

Development of PCL-PMMA nanofiber reinforced composites and profiling of their oral microbiome for dental applications

Funding Agency: ICMR

Co-PI

12,500,000

2024 - Ongoing

Ongoing

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Scholarly Publications

TaxiBGC: a Taxonomy-Guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Secondary Metabolite Production Potential in Metagenomes

Open Access

Article

mSystems. Year: 2022. Volume: 7 , Issue: 6 .

Authors: Vinod K. Gupta ., Utpal Bakshi ., Daniel Chang ., Aileen R. Lee ., John M. Davis ., Sriram Chandrasekaran ., Yong-Su Jin ., Michael F. Freeman ., Jaeyun Sung .,

10.1128/msystems.00925-22

Draft genome sequences of hydrocarbon degrading Haloferax sp. AB510, Haladaptatus sp. AB618 and Haladaptatus sp. AB643 isolated from the estuarine sediments of Sundarban mangrove forests, India

Open Access

Article

3 Biotech. Year: 2022. Volume: 12 , Issue: 9 .

Authors: Shayantan Mukherji ., Utpal Bakshi ., Abhrajyoti Ghosh .,

10.1007/s13205-022-03273-5

Gut Microbiome Predicts Clinically Important Improvement in Patients with Rheumatoid Arthritis

Open Access

article

Year: 2021. Pages: 2020--12 .

Authors: Gupta, Vinod K and Cunningham, Kevin Y and Bakshi, Utpal and Hur, Benjamin and Huang, Harvey and Warrington, Kenneth J and Taneja, Veena and Myasoedova, Elena and Davis III, John M and Sung, Jaeyun

Gut microbial determinants of clinically important improvement in patients with rheumatoid arthritis

Open Access

Article

Genome Medicine. Year: 2021. Volume: 13 , Issue: 1 .

Authors: Vinod K. Gupta ., Kevin Y. Cunningham ., Benjamin Hur ., Utpal Bakshi ., Harvey Huang ., Kenneth J. Warrington ., Veena Taneja ., Elena Myasoedova ., John M. Davis ., Jaeyun Sung .,

10.1186/s13073-021-00957-0

Microbiome and ecology of a hot spring-microbialite system on the Trans-Himalayan Plateau

Open Access

Article

Scientific Reports. Year: 2020. Volume: 10 , Issue: 1 .

Authors: Roy C.;Rameez M.J.;Haldar P.K.;Peketi A.;Mondal N.;Bakshi U.;Mapder T.;Pyne P.;Fernandes S.;Bhattacharya S.;Roy R.;Mandal S.;O’Neill W.K.;Mazumdar A.;Mukhopadhyay S.K.;Mukherjee A.;Chakraborty R.;Hallsworth J.E.;Ghosh W.

10.1038/s41598-020-62797-z

A predictive index for health status using species-level gut microbiome profiling

Open Access

Article

Nature Communications. Year: 2020. Volume: 11 , Issue: 1 .

Authors: Vinod K. Gupta ., Minsuk Kim ., Utpal Bakshi ., Kevin Y. Cunningham ., John M. Davis ., Konstantinos N. Lazaridis ., Heidi Nelson ., Nicholas Chia ., Jaeyun Sung .,

10.1038/s41467-020-18476-8

158

151

Phylogenomics of an uncultivated, aerobic and thermophilic, photoheterotrophic member of Chlorobia sheds light into the evolution of the phylum Chlorobi

Open Access

Article

Computational Biology and Chemistry. Year: 2019. Volume: 80 , Pages: 206-216 .

Authors: Chayan Roy ., Utpal Bakshi ., Moidu Jameela Rameez ., Subhrangshu Mandal ., Prabir Kumar Haldar ., Prosenjit Pyne ., Wriddhiman Ghosh .,

10.1016/j.compbiolchem.2019.04.001

Genome-guided insights into the plant growth promotion capabilities of the physiologically versatile Bacillus aryabhattai strain AB211

Open Access

Article

Frontiers in Microbiology. Year: 2017. Volume: 8 , Issue: MAR .

Authors: Chandrima Bhattacharyya ., Utpal Bakshi ., Ivy Mallick ., Shayantan Mukherji ., Biswajit Bera ., Abhrajyoti Ghosh .,

10.3389/fmicb.2017.00411

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