Ministry of Education
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Prof Rahul Siddharthan

vidwan id: 252950
Male

Professor, Department of Computational Biology
The Institute of Mathematical Sciences (IMSc), Chennai

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Expertise

  • Multidisciplinary Physics

Publications

Total Articles 25
Books 0
Proceedings 0

Publications

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Scopus

Citations 596
h-index 11

CrossRef

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Citations 437
h-index 11
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Professional Recognition

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Community & Membership

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Bio

Regulatory genomics, transcriptional factor binding sites, NGS data analysis, Chromatin, chromosomes, centromeres, Evolutionary biology, Machine learning

Personal Details

  • Male
  • Professor , The Institute of Mathematical Sciences (IMSc), Chennai
  • The Institute of Mathematical Sciences, IV Cross Road, CIT Campus, Taramani
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Other Institute 2004
Professor Jan 2004 – Present
The Institute of Mathematical Sciences (IMSc), Chennai | Department of Computational Biology

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Co-Authors (10)

Arunaloke

Dr Arunaloke Chakrabarti

Post Graduate Institute of Medical Sciences

Gautam

Dr Gautam Chatterjee

Ramakrishna Mission Vivekananda Educational and Research Institute, Howrah

Leelavati

Dr Leelavati Narlikar

Indian Institute of Science Education and Research(IISER), Pune

Madhulika

Prof Madhulika Dixit

Indian Institute of Technology Madras

Gautam I

Prof Gautam I Menon

The Institute of Mathematical Sciences (IMSc), Chennai

K

Dr K Natarajan

Jawaharlal Nehru University

Rana P

Dr Rana P Singh

Jawaharlal Nehru University

Ranjith

Dr Ranjith Padinhateeri

Indian Institute of Technology Bombay

Kaustuv

Prof Kaustuv Sanyal

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Krishnaswamy

Prof Krishnaswamy Vijayraghavan

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Scholarly Work

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Scholarly Publications

Functional and comparative analysis of centromeres reveals clade-specific genome rearrangements in candida auris and a chromosome number change in related species

Open Access
Article
Year: 2021. Volume: 12 , Issue: 3 .
Authors: Narayanan A.;Vadnala R.N.;Ganguly P.;Selvakumar P.;Rudramurthy S.M.;Prasad R.;Chakrabarti A.;Siddharthan R.;Sanyal K.
DOI 10.1128/mBio.00905-21
19 20

Orc4 spatiotemporally stabilizes centromeric chromatin

Open Access
Article
Genome Research. Year: 2021. Volume: 31 , Issue: 4 , Pages: 607-621 .
Authors: Sreekumar L.;Kumari K.;Guin K.;Bakshi A.;Varshney N.;Thimmappa B.C.;Narlikar L.;Padinhateeri R.;Siddharthan R.;Sanyal K.
DOI 10.1101/GR.265900.120
9 7

Loss of centromere function drives karyotype evolution in closely related Malassezia species

Open Access
Article
eLife. Year: 2020. Volume: 9 .
Authors: Sankaranarayanan S.R.;Ianiri G.;Coelho M.A.;Reza M.H.;Thimmappa B.C.;Ganguly P.;Vadnala R.N.;Sun S.;Siddharthan R.;Tellgren-Roth C.;Dawson T.L.;Heitman J.;Sanyal K.
DOI 10.7554/eLife.53944
49 38

Altered kinetics of circulating progenitor cells in cardiopulmonary bypass (CPB) associated vasoplegic patients: A pilot study

Open Access
Article
PLoS ONE. Year: 2020. Volume: 15 , Issue: 11 November .
Authors: Nandi S.;Potunuru U.R.;Kumari C.;Nathan A.A.;Gopal J.;Menon G.I.;Siddharthan R.;Dixit M.;Thangaraj P.R.
DOI 10.1371/journal.pone.0242375

Chipulate: A comprehensive ChiP-seq simulation pipeline

Open Access
Article
PLOS Computational Biology. Year: 2019. Volume: 15 , Issue: 3 .
Authors: Vishaka Datta ., Sridhar Hannenhalli ., Rahul Siddharthan .,
DOI 10.1371/journal.pcbi.1006921
10 6

THiCweed: Fast, sensitive detection of sequence features by clustering big datasets

Open Access
Article
Nucleic Acids Research. Year: 2019. Volume: 46 , Issue: 5 , Pages: E29 .
Authors: Agrawal A.;Sambare S.V.;Narlikar L.;Siddharthan R.
DOI 10.1093/nar/gkx1251
5 3

Detection of cooperatively bound transcription factor pairs using chip-seq peak intensities and expectation maximization

Open Access
Article
PLoS ONE. Year: 2018. Volume: 13 , Issue: 7 .
Authors: Vishaka Datta ., Rahul Siddharthan ., Sandeep Krishna .,
DOI 10.1371/journal.pone.0199771
13 3

Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis

Open Access
Article
Nucleic Acids Research. Year: 2017. Volume: 45 , Issue: 5 , Pages: 2629-2643 .
Authors: Zhu Y.;Engström P.G.;Tellgren-Roth C.;Baudo C.D.;Kennell J.C.;Sun S.;Billmyre R.B.;Schröder M.S.;Andersson A.;Holm T.;Sigurgeirsson B.;Wu G.;Sankaranarayanan S.R.;Siddharthan R.;Sanyal K.;Lundeberg J.;Nystedt B.;Boekhout T.;Dawson T.L.;Heitman J.;Scheyniu
DOI 10.1093/nar/gkx006
20 34